-----------------------------------------------------------------------------
- Banjo                        Bayesian Network Inference with Java Objects -
- Release 2.2.0                                                 15 Apr 2008 -
- Licensed from Duke University                                             -
- Copyright (c) 2005-08 by Alexander J. Hartemink                           -
- All rights reserved                                                       -
-----------------------------------------------------------------------------
- Project:                                                               20.4
- User:                                                              lsand039
- Dataset:                                  20-vars-377-temporal-observations
- Notes:                                    static bayesian network inference
-----------------------------------------------------------------------------
- Settings file:                                                             
-----------------------------------------------------------------------------
- Input directory:                                 data/release2.0/runA/input
- Observations file:                                                   20.txt
- Observation count:                                                      377
- Number of variables:                                                     21
- Variables are in rows:                                                  yes
- Variable names:                                                      inFile
- Discretization policy:                                                   i7
- Exceptions to the discretization policy:                               none
-----------------------------------------------------------------------------
- Initial structure file:                                                    
- 'Must be present' edges file:                                              
- 'Must not be present' edges file:                                          
- Min. Markov lag:                                                          0
- Max. Markov lag:                                                          0
- Max. parent count:                                                        5
- Equivalent sample size for Dirichlet parameter prior:                   1.0
-----------------------------------------------------------------------------
- Searcher:                                                 SearcherSimAnneal
- Proposer:                                           ProposerRandomLocalMove
- Evaluator:                                        defaulted to EvaluatorBDe
- Decider:                                     defaulted to DeciderMetropolis
-----------------------------------------------------------------------------
- Pre-compute logGamma:                                                    no
- Cache:                                                           fastLevel1
- Cycle checking method:                                   Depth-first Search
-----------------------------------------------------------------------------
- Initial temperature:                                                  25000
- Cooling factor:                                                         0.7
- Reannealing temperature:                                                800
- Max. accepted networks before cooling:                                  250
- Max. proposed networks before cooling:                                25000
- Min. accepted networks before reannealing:                              250
-----------------------------------------------------------------------------
- Output directory:                               data/release2.0/runA/output
- Report file:                      20.4static.report.2016.09.01.20.18.40.txt
- Number of best networks tracked:                                          1
- Max. time:                                                            4.0 h
- Max. restarts:                                                        25000
- Min. networks before checking:                                          250
- Screen reporting interval:                                           10.0 m
- File reporting interval:                                             2.05 h
-----------------------------------------------------------------------------
- Compute influence scores:                                               yes
- Compute consensus graph:                                                yes
- Create consensus graph as HTML:                                         yes
- Create 'dot' output:                                                    yes
- Location of 'dot':  /usr/bin/dot /usr/bin/X11/dot /usr/share/man/man1/dot.1.gz
-----------------------------------------------------------------------------
- XML output directory:                           data/release2.0/runA/output
- XML Report file:                                                           
- XML settings to export:                                                    
- XML parser:                             org.apache.xerces.parsers.SAXParser
- Banjo XML format version:                                               1.0
-----------------------------------------------------------------------------
- Seed for starting search:                                     1472775520561
-----------------------------------------------------------------------------
- Number of threads:                                                        1
-----------------------------------------------------------------------------

Memory info before starting the search: Banjo is using 1 mb of memory
Prep. time used: 125.0 ms
Beginning to search: expect a status report every 10.0 m

Status:  Networks   71104500
         Time       10.0 m (4.1% of max. 4.0 h)
         Re-anneals  1 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   130833000
         Time       20.0 m (8.3% of max. 4.0 h)
         Re-anneals  1 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   192858500
         Time       30.0 m (12.5% of max. 4.0 h)
         Re-anneals  1 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   255647250
         Time       40.0 m (16.6% of max. 4.0 h)
         Re-anneals  1 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   322412750
         Time       50.0 m (20.8% of max. 4.0 h)
         Re-anneals  1 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   391070750
         Time       1.0 h (25.0% of max. 4.0 h)
         Re-anneals  1 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   459558000
         Time       1.17 h (29.1% of max. 4.0 h)
         Re-anneals  1 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   528820250
         Time       1.33 h (33.3% of max. 4.0 h)
         Re-anneals  1 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   598072750
         Time       1.5 h (37.5% of max. 4.0 h)
         Re-anneals  1 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   666890000
         Time       1.67 h (41.6% of max. 4.0 h)
         Re-anneals  1 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   736613500
         Time       1.83 h (45.8% of max. 4.0 h)
         Re-anneals  1 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   805908000
         Time       2.0 h (50.0% of max. 4.0 h)
         Re-anneals  1 (0.0% of max. 25000)
         Banjo is using 5 mb of memory


-----------------------------------------------------------------------------
- Intermediate report                                     Best network so far
-----------------------------------------------------------------------------

Network score: -3311.1687, first found at iteration 30302
21
 0 2 9 16
 1 1 17
 2 2 13 17
 3 2 13 18
 4 2 1 12
 5 2 0 13
 6 2 13 16
 7 2 12 20
 8 2 0 13
 9 2 3 13
10 2 12 14
11 2 1 17
12 2 6 17
13 2 11 17
14 2 6 7
15 2 3 6
16 2 2 11
17 0
18 2 4 13
19 2 3 13
20 2 3 13

-----------------------------------------------------------------------------


Status:  Networks   874778750
         Time       2.17 h (54.1% of max. 4.0 h)
         Re-anneals  1 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   945293000
         Time       2.33 h (58.3% of max. 4.0 h)
         Re-anneals  1 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   1014157000
         Time       2.5 h (62.5% of max. 4.0 h)
         Re-anneals  1 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   1086268250
         Time       2.67 h (66.6% of max. 4.0 h)
         Re-anneals  1 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   1161783500
         Time       2.83 h (70.8% of max. 4.0 h)
         Re-anneals  1 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   1236510250
         Time       3.0 h (75.0% of max. 4.0 h)
         Re-anneals  1 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   1311288000
         Time       3.17 h (79.1% of max. 4.0 h)
         Re-anneals  1 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   1386100250
         Time       3.33 h (83.3% of max. 4.0 h)
         Re-anneals  1 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   1461487250
         Time       3.5 h (87.5% of max. 4.0 h)
         Re-anneals  1 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   1536448500
         Time       3.67 h (91.6% of max. 4.0 h)
         Re-anneals  1 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   1611487250
         Time       3.83 h (95.8% of max. 4.0 h)
         Re-anneals  1 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   1686979750
         Time       4.0 h (100.0% of max. 4.0 h)
         Re-anneals  1 (0.0% of max. 25000)
         Banjo is using 5 mb of memory



-----------------------------------------------------------------------------
- Final report                                           Best network overall
-----------------------------------------------------------------------------


Network score: -3311.1687, first found at iteration 30302
21
 0 2 9 16
 1 1 17
 2 2 13 17
 3 2 13 18
 4 2 1 12
 5 2 0 13
 6 2 13 16
 7 2 12 20
 8 2 0 13
 9 2 3 13
10 2 12 14
11 2 1 17
12 2 6 17
13 2 11 17
14 2 6 7
15 2 3 6
16 2 2 11
17 0
18 2 4 13
19 2 3 13
20 2 3 13


-----------------------------------------------------------------------------
- Search Statistics                                                          
-----------------------------------------------------------------------------

Statistics collected in searcher 'SearcherSimAnneal':
  Number of networks examined: 1686979750
  Total time used: 4.0 h
  High score: -3311.1687, first found at iteration 30302
  Number of re-anneals: 1

Statistics collected in proposer 'ProposerRandomLocalMove':
  Additions -- proposed:    562322774
  Deletions -- proposed:    562322692
  Reversals -- proposed:    562334283

Statistics collected in cycle checker 'CycleCheckerCheckThenApply':
  Additions -- considered:  562322774,  acyclic:  370466606
  Deletions -- no cyclicity test necessary
  Reversals -- considered:  562334283,  acyclic:  321645772

Statistics collected in evaluator 'EvaluatorBDe':
  Scores computed:          545170126
  Scores (cache)            placed         fetched        
      with 0 parents:       21             27440666       
      with 1 parents:       420            746855438      
      with 2 parents:       47021125       95583816       
      with 3 parents:       446973291      149559379      
      with 4 parents:       51175150       11471873       
      with 5 parents:       119            6              

Statistics collected in decider 'DeciderMetropolis':
  Additions -- considered:  370466606,  better score:  4186,  other accepted:  1791
  Deletions -- considered:  562322692,  better score:  1762,  other accepted:  4174
  Reversals -- considered:  321645772,  better score:  30181952,  other accepted:  8597
  Average permissivity:     0.0

Memory info after completing the search: Banjo is using 5 mb of memory


Network score: -3311.1687, found by thread 1
21
 0 2 9 16
 1 1 17
 2 2 13 17
 3 2 13 18
 4 2 1 12
 5 2 0 13
 6 2 13 16
 7 2 12 20
 8 2 0 13
 9 2 3 13
10 2 12 14
11 2 1 17
12 2 6 17
13 2 11 17
14 2 6 7
15 2 3 6
16 2 2 11
17 0
18 2 4 13
19 2 3 13
20 2 3 13

-----------------------------------------------------------------------------
- Post-processing                                            Influence scores
-----------------------------------------------------------------------------

Influence score for  (16,0) ->   (0,0)   .3223
Influence score for   (9,0) ->   (0,0)   .3311
Influence score for  (17,0) ->   (1,0)   .0000
Influence score for  (17,0) ->   (2,0)   .3726
Influence score for  (13,0) ->   (2,0)   .3307
Influence score for  (18,0) ->   (3,0)   .0643
Influence score for  (13,0) ->   (3,0)   .1942
Influence score for  (12,0) ->   (4,0)   -.1644
Influence score for   (1,0) ->   (4,0)   .0000
Influence score for  (13,0) ->   (5,0)   .0000
Influence score for   (0,0) ->   (5,0)   .4245
Influence score for  (16,0) ->   (6,0)   .0000
Influence score for  (13,0) ->   (6,0)   .0000
Influence score for  (20,0) ->   (7,0)   .3211
Influence score for  (12,0) ->   (7,0)   .0647
Influence score for  (13,0) ->   (8,0)   .0000
Influence score for   (0,0) ->   (8,0)   -.0670
Influence score for  (13,0) ->   (9,0)   .3307
Influence score for   (3,0) ->   (9,0)   .3307
Influence score for  (14,0) ->  (10,0)   .0000
Influence score for  (12,0) ->  (10,0)   .0000
Influence score for  (17,0) ->  (11,0)   .2161
Influence score for   (1,0) ->  (11,0)   -.1625
Influence score for  (17,0) ->  (12,0)   .3817
Influence score for   (6,0) ->  (12,0)   .1641
Influence score for  (17,0) ->  (13,0)   .0000
Influence score for  (11,0) ->  (13,0)   .0000
Influence score for   (7,0) ->  (14,0)   .1664
Influence score for   (6,0) ->  (14,0)   .2200
Influence score for   (6,0) ->  (15,0)   .3307
Influence score for   (3,0) ->  (15,0)   .3307
Influence score for  (11,0) ->  (16,0)   .4271
Influence score for   (2,0) ->  (16,0)   .0000
Influence score for  (13,0) ->  (18,0)   .0000
Influence score for   (4,0) ->  (18,0)   -.1622
Influence score for  (13,0) ->  (19,0)   .3307
Influence score for   (3,0) ->  (19,0)   .3307
Influence score for  (13,0) ->  (20,0)   .3307
Influence score for   (3,0) ->  (20,0)   .2937

-----------------------------------------------------------------------------
- Post-processing                                  DOT graphics format output
-----------------------------------------------------------------------------

digraph abstract { 

label = "Banjo Version 2.2.0\nHigh scoring network, score: -3311.1687\nProject: 20.4\nUser: lsand039\nDataset: 20-vars-377-temporal-observations"; 
labeljust="l"; 

    0 [label="Alzheimer"];
    1 [label="GNG4"];
    2 [label="THBS1"];
    3 [label="SIX6"];
    4 [label="GRIK1"];
    5 [label="WWC1"];
    6 [label="KIR2DS3"];
    7 [label="CEACAM6"];
    8 [label="NDUFA7"];
    9 [label="TLR8"];
    10 [label="FAIM3"];
    11 [label="MDFIC"];
    12 [label="GH1"];
    13 [label="REG1B"];
    14 [label="NTRK1"];
    15 [label="PDZD3"];
    16 [label="EDN1"];
    17 [label="ERGIC3"];
    18 [label="S100A2"];
    19 [label="HS3ST1"];
    20 [label="OR12D3"];

    9->0;
    16->0;
    17->1;
    13->2;
    17->2;
    13->3;
    18->3;
    1->4;
    12->4;
    0->5;
    13->5;
    13->6;
    16->6;
    12->7;
    20->7;
    0->8;
    13->8;
    3->9;
    13->9;
    12->10;
    14->10;
    1->11;
    17->11;
    6->12;
    17->12;
    11->13;
    17->13;
    6->14;
    7->14;
    3->15;
    6->15;
    2->16;
    11->16;
    4->18;
    13->18;
    3->19;
    13->19;
    3->20;
    13->20;
}

